diff --git a/Externals/Bochs_disasm/Bochs_disasm.vcxproj b/Externals/Bochs_disasm/Bochs_disasm.vcxproj
index f7110f2e9a..50f62f70f6 100644
--- a/Externals/Bochs_disasm/Bochs_disasm.vcxproj
+++ b/Externals/Bochs_disasm/Bochs_disasm.vcxproj
@@ -152,7 +152,6 @@
     <None Include="CMakeLists.txt" />
     <None Include="dis_tables.inl" />
     <None Include="opcodes.inl" />
-    <None Include="SConscript" />
   </ItemGroup>
   <Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
   <ImportGroup Label="ExtensionTargets">
diff --git a/Externals/CLRun/clrun/CLRun.vcxproj b/Externals/CLRun/clrun/CLRun.vcxproj
index 0b168991d0..c6a4cb2e6d 100644
--- a/Externals/CLRun/clrun/CLRun.vcxproj
+++ b/Externals/CLRun/clrun/CLRun.vcxproj
@@ -166,9 +166,7 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="..\CMakeLists.txt" />
-    <None Include="..\SConscript" />
     <None Include="generateClRun.pl" />
-    <None Include="Makefile" />
   </ItemGroup>
   <Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
   <ImportGroup Label="ExtensionTargets">
diff --git a/Externals/CLRun/clrun/CLRun.vcxproj.filters b/Externals/CLRun/clrun/CLRun.vcxproj.filters
index 795200b898..3f252a668b 100644
--- a/Externals/CLRun/clrun/CLRun.vcxproj.filters
+++ b/Externals/CLRun/clrun/CLRun.vcxproj.filters
@@ -46,9 +46,7 @@
     </Filter>
   </ItemGroup>
   <ItemGroup>
-    <None Include="Makefile" />
     <None Include="..\CMakeLists.txt" />
-    <None Include="..\SConscript" />
     <None Include="generateClRun.pl">
       <Filter>Resource Files</Filter>
     </None>
diff --git a/Externals/LZO/LZO.vcxproj b/Externals/LZO/LZO.vcxproj
index b29b9b2c84..76b75cdc4c 100644
--- a/Externals/LZO/LZO.vcxproj
+++ b/Externals/LZO/LZO.vcxproj
@@ -143,7 +143,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="CMakeLists.txt" />
-    <None Include="SConscript" />
   </ItemGroup>
   <Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
   <ImportGroup Label="ExtensionTargets">
diff --git a/Externals/LZO/LZO.vcxproj.filters b/Externals/LZO/LZO.vcxproj.filters
index 50cd659802..889fdb14a0 100644
--- a/Externals/LZO/LZO.vcxproj.filters
+++ b/Externals/LZO/LZO.vcxproj.filters
@@ -26,6 +26,5 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="CMakeLists.txt" />
-    <None Include="SConscript" />
   </ItemGroup>
 </Project>
\ No newline at end of file
diff --git a/Externals/SOIL/SOIL.vcxproj b/Externals/SOIL/SOIL.vcxproj
index eba92bad49..33f75bbaf9 100644
--- a/Externals/SOIL/SOIL.vcxproj
+++ b/Externals/SOIL/SOIL.vcxproj
@@ -150,7 +150,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="CMakeLists.txt" />
-    <None Include="SConscript" />
   </ItemGroup>
   <Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
   <ImportGroup Label="ExtensionTargets">
diff --git a/Externals/libpng/png/png.vcxproj b/Externals/libpng/png/png.vcxproj
index 886af15d1b..e272b07452 100644
--- a/Externals/libpng/png/png.vcxproj
+++ b/Externals/libpng/png/png.vcxproj
@@ -28,7 +28,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="..\CMakeLists.txt" />
-    <None Include="..\SConscript" />
   </ItemGroup>
   <ItemGroup>
     <ClCompile Include="..\png.c" />
diff --git a/Externals/libpng/png/png.vcxproj.filters b/Externals/libpng/png/png.vcxproj.filters
index 779fdfc4ff..5bccb29842 100644
--- a/Externals/libpng/png/png.vcxproj.filters
+++ b/Externals/libpng/png/png.vcxproj.filters
@@ -2,7 +2,6 @@
 <Project ToolsVersion="4.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
   <ItemGroup>
     <None Include="..\CMakeLists.txt" />
-    <None Include="..\SConscript" />
   </ItemGroup>
   <ItemGroup>
     <ClCompile Include="..\png.c" />
diff --git a/Externals/wxWidgets3/build/msw/wx_base.vcxproj b/Externals/wxWidgets3/build/msw/wx_base.vcxproj
index ed41c88d76..d99f6f8b94 100644
--- a/Externals/wxWidgets3/build/msw/wx_base.vcxproj
+++ b/Externals/wxWidgets3/build/msw/wx_base.vcxproj
@@ -1534,7 +1534,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="..\..\CMakeLists.txt" />
-    <None Include="..\..\SConscript" />
     <None Include="..\..\src\common\unictabl.inc" />
   </ItemGroup>
   <ItemGroup>
diff --git a/Externals/wxWidgets3/build/msw/wx_base.vcxproj.filters b/Externals/wxWidgets3/build/msw/wx_base.vcxproj.filters
index 7c02f384fa..e11b02d82e 100644
--- a/Externals/wxWidgets3/build/msw/wx_base.vcxproj.filters
+++ b/Externals/wxWidgets3/build/msw/wx_base.vcxproj.filters
@@ -3416,7 +3416,6 @@
       <Filter>Common</Filter>
     </None>
     <None Include="..\..\CMakeLists.txt" />
-    <None Include="..\..\SConscript" />
   </ItemGroup>
   <ItemGroup>
     <ResourceCompile Include="..\..\src\msw\version.rc">
diff --git a/Externals/zlib/zlib.vcxproj b/Externals/zlib/zlib.vcxproj
index 9fdde8c277..e4432e2612 100644
--- a/Externals/zlib/zlib.vcxproj
+++ b/Externals/zlib/zlib.vcxproj
@@ -166,7 +166,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="CMakeLists.txt" />
-    <None Include="SConscript" />
   </ItemGroup>
   <Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
   <ImportGroup Label="ExtensionTargets">
diff --git a/Externals/zlib/zlib.vcxproj.filters b/Externals/zlib/zlib.vcxproj.filters
index eed3c06cf2..5e4b0a7921 100644
--- a/Externals/zlib/zlib.vcxproj.filters
+++ b/Externals/zlib/zlib.vcxproj.filters
@@ -83,7 +83,6 @@
     </ClInclude>
   </ItemGroup>
   <ItemGroup>
-    <None Include="SConscript" />
     <None Include="CMakeLists.txt" />
   </ItemGroup>
   <ItemGroup>
diff --git a/Source/Core/AudioCommon/AudioCommon.vcxproj b/Source/Core/AudioCommon/AudioCommon.vcxproj
index a82ab9aecc..0c5f256c19 100644
--- a/Source/Core/AudioCommon/AudioCommon.vcxproj
+++ b/Source/Core/AudioCommon/AudioCommon.vcxproj
@@ -210,7 +210,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="CMakeLists.txt" />
-    <None Include="Src\SConscript" />
   </ItemGroup>
   <ItemGroup>
     <ProjectReference Include="..\Common\Common.vcxproj">
diff --git a/Source/Core/AudioCommon/AudioCommon.vcxproj.filters b/Source/Core/AudioCommon/AudioCommon.vcxproj.filters
index f3fd6b4aaa..7e098ecb85 100644
--- a/Source/Core/AudioCommon/AudioCommon.vcxproj.filters
+++ b/Source/Core/AudioCommon/AudioCommon.vcxproj.filters
@@ -46,7 +46,6 @@
     </ClInclude>
   </ItemGroup>
   <ItemGroup>
-    <None Include="Src\SConscript" />
     <None Include="CMakeLists.txt" />
   </ItemGroup>
   <ItemGroup>
diff --git a/Source/Core/Core/Core.vcxproj b/Source/Core/Core/Core.vcxproj
index 1e0561bc23..e03d40e43a 100644
--- a/Source/Core/Core/Core.vcxproj
+++ b/Source/Core/Core/Core.vcxproj
@@ -571,7 +571,6 @@
   <ItemGroup>
     <None Include="CMakeLists.txt" />
     <None Include="Src\HW\DSPHLE\UCodes\UCode_Zelda_Obsolete.txt" />
-    <None Include="Src\SConscript" />
   </ItemGroup>
   <ItemGroup>
     <ProjectReference Include="..\..\..\Externals\Bochs_disasm\Bochs_disasm.vcxproj">
diff --git a/Source/Core/Core/Core.vcxproj.filters b/Source/Core/Core/Core.vcxproj.filters
index 66b25af176..020cf76ad0 100644
--- a/Source/Core/Core/Core.vcxproj.filters
+++ b/Source/Core/Core/Core.vcxproj.filters
@@ -1036,7 +1036,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="CMakeLists.txt" />
-    <None Include="Src\SConscript" />
     <None Include="Src\HW\DSPHLE\UCodes\UCode_Zelda_Obsolete.txt">
       <Filter>HW %28Flipper/Hollywood%29\DSP Interface + HLE\HLE\uCodes</Filter>
     </None>
diff --git a/Source/Core/DiscIO/DiscIO.vcxproj b/Source/Core/DiscIO/DiscIO.vcxproj
index d94ac13212..417b28fa0a 100644
--- a/Source/Core/DiscIO/DiscIO.vcxproj
+++ b/Source/Core/DiscIO/DiscIO.vcxproj
@@ -226,7 +226,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="CMakeLists.txt" />
-    <None Include="Src\SConscript" />
   </ItemGroup>
   <Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
   <ImportGroup Label="ExtensionTargets">
diff --git a/Source/Core/DiscIO/DiscIO.vcxproj.filters b/Source/Core/DiscIO/DiscIO.vcxproj.filters
index 80ddbe57c6..a16eb0625d 100644
--- a/Source/Core/DiscIO/DiscIO.vcxproj.filters
+++ b/Source/Core/DiscIO/DiscIO.vcxproj.filters
@@ -133,7 +133,6 @@
     </ClInclude>
   </ItemGroup>
   <ItemGroup>
-    <None Include="Src\SConscript" />
     <None Include="CMakeLists.txt" />
   </ItemGroup>
   <ItemGroup>
diff --git a/Source/Core/DolphinWX/Dolphin.vcxproj b/Source/Core/DolphinWX/Dolphin.vcxproj
index 27edc2e619..72c40a3db4 100644
--- a/Source/Core/DolphinWX/Dolphin.vcxproj
+++ b/Source/Core/DolphinWX/Dolphin.vcxproj
@@ -330,7 +330,6 @@ xcopy "$(SolutionDir)..\Externals\SDL\$(PlatformName)\*.dll" "$(TargetDir)" /e /
   <ItemGroup>
     <None Include="..\..\..\Installer\Dolphin.ico" />
     <None Include="CMakeLists.txt" />
-    <None Include="Src\SConscript" />
   </ItemGroup>
   <ItemGroup>
     <ProjectReference Include="..\..\..\Externals\Bochs_disasm\Bochs_disasm.vcxproj">
diff --git a/Source/Core/DolphinWX/Dolphin.vcxproj.filters b/Source/Core/DolphinWX/Dolphin.vcxproj.filters
index ec7d68798b..61ae0826fc 100644
--- a/Source/Core/DolphinWX/Dolphin.vcxproj.filters
+++ b/Source/Core/DolphinWX/Dolphin.vcxproj.filters
@@ -266,7 +266,6 @@
     </ClInclude>
   </ItemGroup>
   <ItemGroup>
-    <None Include="Src\SConscript" />
     <None Include="CMakeLists.txt" />
     <None Include="..\..\..\Installer\Dolphin.ico">
       <Filter>Resources</Filter>
diff --git a/Source/Core/InputCommon/InputCommon.vcxproj b/Source/Core/InputCommon/InputCommon.vcxproj
index 8eed835b2d..dc987d83a2 100644
--- a/Source/Core/InputCommon/InputCommon.vcxproj
+++ b/Source/Core/InputCommon/InputCommon.vcxproj
@@ -191,7 +191,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="CMakeLists.txt" />
-    <None Include="Src\SConscript" />
   </ItemGroup>
   <Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
   <ImportGroup Label="ExtensionTargets">
diff --git a/Source/Core/InputCommon/InputCommon.vcxproj.filters b/Source/Core/InputCommon/InputCommon.vcxproj.filters
index c6acfdd6b3..311476bc72 100644
--- a/Source/Core/InputCommon/InputCommon.vcxproj.filters
+++ b/Source/Core/InputCommon/InputCommon.vcxproj.filters
@@ -54,7 +54,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="CMakeLists.txt" />
-    <None Include="Src\SConscript" />
   </ItemGroup>
   <ItemGroup>
     <Filter Include="ControllerInterface">
diff --git a/Source/Core/VideoCommon/VideoCommon.vcxproj b/Source/Core/VideoCommon/VideoCommon.vcxproj
index dd29d29ccb..f53c18cb37 100644
--- a/Source/Core/VideoCommon/VideoCommon.vcxproj
+++ b/Source/Core/VideoCommon/VideoCommon.vcxproj
@@ -266,7 +266,6 @@
   <ItemGroup>
     <None Include="..\..\..\Data\User\OpenCL\TextureDecoder.cl" />
     <None Include="CMakeLists.txt" />
-    <None Include="Src\SConscript" />
   </ItemGroup>
   <ItemGroup>
     <ProjectReference Include="..\..\..\Externals\CLRun\clrun\CLRun.vcxproj">
diff --git a/Source/Core/VideoCommon/VideoCommon.vcxproj.filters b/Source/Core/VideoCommon/VideoCommon.vcxproj.filters
index 5ce157a78e..c933fbc939 100644
--- a/Source/Core/VideoCommon/VideoCommon.vcxproj.filters
+++ b/Source/Core/VideoCommon/VideoCommon.vcxproj.filters
@@ -248,7 +248,6 @@
     </ClInclude>
   </ItemGroup>
   <ItemGroup>
-    <None Include="Src\SConscript" />
     <None Include="CMakeLists.txt" />
     <None Include="..\..\..\Data\User\OpenCL\TextureDecoder.cl">
       <Filter>Decoding\OpenCL</Filter>
diff --git a/Source/DSPTool/DSPTool.vcxproj b/Source/DSPTool/DSPTool.vcxproj
index 0cd03302aa..e72c055233 100644
--- a/Source/DSPTool/DSPTool.vcxproj
+++ b/Source/DSPTool/DSPTool.vcxproj
@@ -192,7 +192,6 @@
     </Link>
   </ItemDefinitionGroup>
   <ItemGroup>
-    <None Include="SConscript" />
     <None Include="Testdata\dsp_test.bin" />
     <None Include="Testdata\dsp_test.S" />
     <None Include="Testdata\hermes.bin" />
diff --git a/Source/DSPTool/DSPTool.vcxproj.filters b/Source/DSPTool/DSPTool.vcxproj.filters
index 8ab6b219a0..c5b78da492 100644
--- a/Source/DSPTool/DSPTool.vcxproj.filters
+++ b/Source/DSPTool/DSPTool.vcxproj.filters
@@ -18,7 +18,6 @@
     <None Include="Testdata\hermes.s">
       <Filter>TestData</Filter>
     </None>
-    <None Include="SConscript" />
   </ItemGroup>
   <ItemGroup>
     <ClCompile Include="Src\DSPTool.cpp" />
diff --git a/Source/Plugins/Plugin_VideoOGL/Plugin_VideoOGL.vcxproj b/Source/Plugins/Plugin_VideoOGL/Plugin_VideoOGL.vcxproj
index d72f0fa9a9..18b8ac4d84 100644
--- a/Source/Plugins/Plugin_VideoOGL/Plugin_VideoOGL.vcxproj
+++ b/Source/Plugins/Plugin_VideoOGL/Plugin_VideoOGL.vcxproj
@@ -235,7 +235,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="CMakeLists.txt" />
-    <None Include="Src\SConscript" />
   </ItemGroup>
   <ItemGroup>
     <ProjectReference Include="..\..\..\Externals\zlib\zlib.vcxproj">
diff --git a/Source/Plugins/Plugin_VideoOGL/Plugin_VideoOGL.vcxproj.filters b/Source/Plugins/Plugin_VideoOGL/Plugin_VideoOGL.vcxproj.filters
index ed581ff963..cd170691da 100644
--- a/Source/Plugins/Plugin_VideoOGL/Plugin_VideoOGL.vcxproj.filters
+++ b/Source/Plugins/Plugin_VideoOGL/Plugin_VideoOGL.vcxproj.filters
@@ -74,7 +74,6 @@
     </ClInclude>
   </ItemGroup>
   <ItemGroup>
-    <None Include="Src\SConscript" />
     <None Include="CMakeLists.txt" />
   </ItemGroup>
   <ItemGroup>
diff --git a/Source/Plugins/Plugin_VideoSoftware/Plugin_VideoSoftware.vcxproj b/Source/Plugins/Plugin_VideoSoftware/Plugin_VideoSoftware.vcxproj
index 7235327fb9..66cfab9b01 100644
--- a/Source/Plugins/Plugin_VideoSoftware/Plugin_VideoSoftware.vcxproj
+++ b/Source/Plugins/Plugin_VideoSoftware/Plugin_VideoSoftware.vcxproj
@@ -239,7 +239,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="CMakeLists.txt" />
-    <None Include="Src\SConscript" />
   </ItemGroup>
   <Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
   <ImportGroup Label="ExtensionTargets">
diff --git a/Source/Plugins/Plugin_VideoSoftware/Plugin_VideoSoftware.vcxproj.filters b/Source/Plugins/Plugin_VideoSoftware/Plugin_VideoSoftware.vcxproj.filters
index 57784e2717..4bc1901325 100644
--- a/Source/Plugins/Plugin_VideoSoftware/Plugin_VideoSoftware.vcxproj.filters
+++ b/Source/Plugins/Plugin_VideoSoftware/Plugin_VideoSoftware.vcxproj.filters
@@ -56,7 +56,6 @@
   </ItemGroup>
   <ItemGroup>
     <None Include="CMakeLists.txt" />
-    <None Include="Src\SConscript" />
   </ItemGroup>
   <ItemGroup>
     <Filter Include="Win32">